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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_3168KEGG: dde:Dde_1310 hypothetical protein. (304 aa)    
Predicted Functional Partners:
DvMF_3167
PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1309 TPR domain-containing protein.
       0.746
DvMF_1024
KEGG: dol:Dole_1403 hypothetical protein.
  
 
 0.718
DvMF_1028
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: dol:Dole_1408 type II secretion system protein E.
   
 
 0.605
DvMF_1029
PFAM: type II secretion system protein; KEGG: dol:Dole_1409 type II secretion system protein.
   
 
 0.605
DvMF_2450
PFAM: ComEC/Rec2-related protein; KEGG: dde:Dde_0547 ComEC/Rec2-related protein.
      
 0.451
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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