Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_3175PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_1320 rubrerythrin, putative. (164 aa)    
Predicted Functional Partners:
DvMF_0219
Peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: aae:aq_486 alkyl hydroperoxide reductase.
  
  
 0.801
fur-2
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: dde:Dde_3674 ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.777
DvMF_2834
KEGG: dde:Dde_1143 hypothetical protein.
  
  
 0.772
DvMF_2088
KEGG: dde:Dde_0885 hypothetical protein.
  
    0.756
DvMF_2367
PFAM: Rubrerythrin; KEGG: dde:Dde_1222 rubrerythrin.
  
  
0.706
DvMF_2368
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_0689 rubredoxin-type Fe(Cys)4 protein; Belongs to the rubredoxin family.
  
  
 0.634
DvMF_0328
KEGG: dde:Dde_1214 hypothetical protein.
 
  
 0.494
DvMF_3174
Putative two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; KEGG: mca:MCA2330 DNA-binding response regulator.
  
  
 0.456
DvMF_2803
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_2749 rubredoxin.
  
  
 0.433
DvMF_0116
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: dde:Dde_2211 ferric uptake regulator family protein; Belongs to the Fur family.
 
  
 0.431
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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