Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_3186PFAM: protein of unknown function DUF47; KEGG: sfu:Sfum_2274 protein of unknown function DUF47. (209 aa)    
Predicted Functional Partners:
DvMF_3185
PFAM: phosphate transporter; KEGG: lip:LI0811 phosphate/sulphate permeases.
 
  
 0.992
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
    0.505
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
    0.461
DvMF_2180
PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: ppd:Ppro_3699 hypothetical protein.
   
    0.451
DvMF_2479
PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3195 rubredoxin-oxygen oxidoreductase.
   
    0.451
DvMF_0171
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1781 metallo-beta-lactamase family protein.
   
  
 0.400
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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