STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKB55846.1Hypothetical protein. (170 aa)    
Predicted Functional Partners:
EKB55949.1
Competence/damage-inducible protein CinA domain; Belongs to the CinA family.
    
 0.870
EKB56722.1
Hypothetical protein.
  
 
 
 0.843
EKB56701.1
Hypothetical protein.
    
 
 0.823
EKB55899.1
Hypothetical protein.
  
     0.549
EKB58177.1
Hypothetical protein.
   
 0.537
EKB58042.1
Hypothetical protein.
   
 0.537
EKB59555.1
Hypothetical protein.
  
     0.495
EKB59592.1
Hypothetical protein.
  
  
 0.493
EKB59356.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.465
EKB55982.1
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.
  
  
 0.464
Your Current Organism:
Bergeyella zoohelcum
NCBI taxonomy Id: 883096
Other names: B. zoohelcum ATCC 43767, Bergeyella zoohelcum ATCC 43767
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.