STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKB54150.1CRISPR type III-a/mtube-associated protein csm2. (157 aa)    
Predicted Functional Partners:
EKB54149.1
CRISPR-associated protein cas10/csm1, subtype III-a/mtube.
  
 
 0.999
EKB54151.1
CRISPR type III-a/mtube-associated ramp protein csm3.
  
 
 0.999
EKB54153.1
CRISPR type III-a/mtube-associated ramp protein csm5.
  
 
 0.999
EKB54152.1
CRISPR type III-a/mtube-associated ramp protein csm4.
  
 
 0.996
EKB54154.1
Hypothetical protein.
       0.745
EKB54155.1
Hypothetical protein.
       0.745
EKB54148.1
CRISPR-associated endoribonuclease cas6; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).
       0.638
EKB54156.1
CRISPR-associated endonuclease cas1, subtype I-b/hmari/tneap.
       0.584
EKB54157.1
CRISPR-associated endoribonuclease cas2.
     
 0.583
Your Current Organism:
Bergeyella zoohelcum
NCBI taxonomy Id: 883096
Other names: B. zoohelcum ATCC 43767, Bergeyella zoohelcum ATCC 43767
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.