EHO87033.1 protein (Eubacterium infirmum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EHO87033.1

Hypothetical protein; Belongs to the methyltransferase superfamily. (387 aa)

Predicted Functional Partners:

EHO87032.1

0.805

trmB

0.766

EHO82418.1

0.627

EHO85271.1

0.585

pnp

0.564

birA

0.561

rimM

0.555

EHO86969.1

0.507

rimP

0.499

nusA

0.496

Your Current Organism:

Eubacterium infirmum

NCBI taxonomy Id: 883109
Other names: E. infirmum F0142, Eubacterium infirmum F0142

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHO82418.1	EHO87033.1	HMPREF0380_01659	HMPREF0380_00007	Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	Hypothetical protein; Belongs to the methyltransferase superfamily.	0.627
EHO82418.1	nusA	HMPREF0380_01659	HMPREF0380_01669	Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	0.763
EHO82418.1	pnp	HMPREF0380_01659	HMPREF0380_00949	Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.660
EHO82418.1	rimM	HMPREF0380_01659	HMPREF0380_01604	Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.	0.579
EHO82418.1	rimP	HMPREF0380_01659	HMPREF0380_01668	Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.	0.738
EHO85271.1	EHO86969.1	HMPREF0380_00996	HMPREF0380_00067	Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Exodeoxyribonuclease.	0.761
EHO85271.1	EHO87033.1	HMPREF0380_00996	HMPREF0380_00007	Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Hypothetical protein; Belongs to the methyltransferase superfamily.	0.585
EHO85271.1	nusA	HMPREF0380_00996	HMPREF0380_01669	Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	0.556
EHO85271.1	pnp	HMPREF0380_00996	HMPREF0380_00949	Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.569
EHO86969.1	EHO85271.1	HMPREF0380_00067	HMPREF0380_00996	Exodeoxyribonuclease.	Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.761
EHO86969.1	EHO87033.1	HMPREF0380_00067	HMPREF0380_00007	Exodeoxyribonuclease.	Hypothetical protein; Belongs to the methyltransferase superfamily.	0.507
EHO86969.1	birA	HMPREF0380_00067	HMPREF0380_00364	Exodeoxyribonuclease.	Hypothetical protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	0.809
EHO87032.1	EHO87033.1	HMPREF0380_00006	HMPREF0380_00007	Hypothetical protein.	Hypothetical protein; Belongs to the methyltransferase superfamily.	0.805
EHO87033.1	EHO82418.1	HMPREF0380_00007	HMPREF0380_01659	Hypothetical protein; Belongs to the methyltransferase superfamily.	Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	0.627
EHO87033.1	EHO85271.1	HMPREF0380_00007	HMPREF0380_00996	Hypothetical protein; Belongs to the methyltransferase superfamily.	Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.585
EHO87033.1	EHO86969.1	HMPREF0380_00007	HMPREF0380_00067	Hypothetical protein; Belongs to the methyltransferase superfamily.	Exodeoxyribonuclease.	0.507
EHO87033.1	EHO87032.1	HMPREF0380_00007	HMPREF0380_00006	Hypothetical protein; Belongs to the methyltransferase superfamily.	Hypothetical protein.	0.805
EHO87033.1	birA	HMPREF0380_00007	HMPREF0380_00364	Hypothetical protein; Belongs to the methyltransferase superfamily.	Hypothetical protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	0.561
EHO87033.1	nusA	HMPREF0380_00007	HMPREF0380_01669	Hypothetical protein; Belongs to the methyltransferase superfamily.	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	0.496
EHO87033.1	pnp	HMPREF0380_00007	HMPREF0380_00949	Hypothetical protein; Belongs to the methyltransferase superfamily.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.564