Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHO86268.1ABC transporter ATP-binding protein. (489 aa)    
Predicted Functional Partners:
EHO86269.1
Hypothetical protein.
 
  0.980
EHO86262.1
Hypothetical protein.
 
  0.975
EHO86574.1
Hypothetical protein.
  
 0.956
EHO86270.1
Hypothetical protein.
 
     0.946
EHO86625.1
Hypothetical protein.
 
  0.913
EHO83321.1
Hypothetical protein.
 
  0.892
EHO86263.1
Hypothetical protein.
 
     0.889
EHO86266.1
Hypothetical protein.
 
  
 
0.855
EHO86267.1
Hypothetical protein.
 
  
 
0.854
EHO86189.1
Hypothetical protein.
 
  0.840
Your Current Organism:
Eubacterium infirmum
NCBI taxonomy Id: 883109
Other names: E. infirmum F0142, Eubacterium infirmum F0142
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