Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHO86274.1Hypothetical protein. (596 aa)    
Predicted Functional Partners:
EHO86275.1
Hypothetical protein.
 
 
 0.875
EHO86276.1
Hypothetical protein.
 
 
 0.863
EHO86632.1
Hypothetical protein.
  
 
 0.686
EHO86273.1
Hypothetical protein.
       0.486
EHO86272.1
Hypothetical protein.
       0.466
EHO86277.1
Hypothetical protein.
       0.427
EHO86779.1
Hypothetical protein.
    
 0.418
EHO82599.1
Hypothetical protein.
    
 0.418
EHO84728.1
Hypothetical protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
     
 0.401
Your Current Organism:
Eubacterium infirmum
NCBI taxonomy Id: 883109
Other names: E. infirmum F0142, Eubacterium infirmum F0142
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