Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHO85541.1Hypothetical protein. (427 aa)    
Predicted Functional Partners:
EHO85542.1
Hypothetical protein.
 
 0.982
EHO85545.1
Hypothetical protein.
 
   
 0.882
EHO85544.1
Hypothetical protein.
 
   
 0.859
EHO86602.1
Hypothetical protein.
  
 0.830
EHO85540.1
Hypothetical protein.
  
  0.810
EHO85543.1
Hypothetical protein.
 
    
0.772
EHO85710.1
Hypothetical protein.
 
  0.700
EHO86603.1
Hypothetical protein.
  
  0.658
EHO86124.1
Hypothetical protein.
  
  0.658
EHO86281.1
Hypothetical protein.
  
  0.658
Your Current Organism:
Eubacterium infirmum
NCBI taxonomy Id: 883109
Other names: E. infirmum F0142, Eubacterium infirmum F0142
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