EHO82355.1 protein (Eubacterium infirmum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EHO82355.1

Magnesium-translocating P-type ATPase. (843 aa)

Predicted Functional Partners:

EHO84033.1

0.754

EHO84036.1

0.714

atpA

0.711

atpE

0.703

atpD

0.701

EHO84037.1

0.695

atpB

0.682

EHO86622.1

0.630

EHO82603.1

0.630

EHO84034.1

0.605

Your Current Organism:

Eubacterium infirmum

NCBI taxonomy Id: 883109
Other names: E. infirmum F0142, Eubacterium infirmum F0142

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHO82355.1	EHO82603.1	HMPREF0380_01596	HMPREF0380_01460	Magnesium-translocating P-type ATPase.	Hypothetical protein.	0.630
EHO82355.1	EHO84033.1	HMPREF0380_01596	HMPREF0380_01320	Magnesium-translocating P-type ATPase.	Hypothetical protein; Belongs to the V-ATPase 116 kDa subunit family.	0.754
EHO82355.1	EHO84034.1	HMPREF0380_01596	HMPREF0380_01321	Magnesium-translocating P-type ATPase.	Hypothetical protein; Belongs to the V-ATPase proteolipid subunit family.	0.605
EHO82355.1	EHO84036.1	HMPREF0380_01596	HMPREF0380_01323	Magnesium-translocating P-type ATPase.	Hypothetical protein.	0.714
EHO82355.1	EHO84037.1	HMPREF0380_01596	HMPREF0380_01324	Magnesium-translocating P-type ATPase.	ATP synthase subunit.	0.695
EHO82355.1	EHO86622.1	HMPREF0380_01596	HMPREF0380_00281	Magnesium-translocating P-type ATPase.	Hypothetical protein.	0.630
EHO82355.1	atpA	HMPREF0380_01596	HMPREF0380_01325	Magnesium-translocating P-type ATPase.	V-type ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	0.711
EHO82355.1	atpB	HMPREF0380_01596	HMPREF0380_01326	Magnesium-translocating P-type ATPase.	V-type ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.	0.682
EHO82355.1	atpD	HMPREF0380_01596	HMPREF0380_01327	Magnesium-translocating P-type ATPase.	V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.701
EHO82355.1	atpE	HMPREF0380_01596	HMPREF0380_01322	Magnesium-translocating P-type ATPase.	ATP synthase subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.703
EHO82603.1	EHO82355.1	HMPREF0380_01460	HMPREF0380_01596	Hypothetical protein.	Magnesium-translocating P-type ATPase.	0.630
EHO82603.1	EHO84033.1	HMPREF0380_01460	HMPREF0380_01320	Hypothetical protein.	Hypothetical protein; Belongs to the V-ATPase 116 kDa subunit family.	0.840
EHO82603.1	EHO84034.1	HMPREF0380_01460	HMPREF0380_01321	Hypothetical protein.	Hypothetical protein; Belongs to the V-ATPase proteolipid subunit family.	0.602
EHO82603.1	EHO84036.1	HMPREF0380_01460	HMPREF0380_01323	Hypothetical protein.	Hypothetical protein.	0.907
EHO82603.1	EHO84037.1	HMPREF0380_01460	HMPREF0380_01324	Hypothetical protein.	ATP synthase subunit.	0.834
EHO82603.1	atpA	HMPREF0380_01460	HMPREF0380_01325	Hypothetical protein.	V-type ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	0.698
EHO82603.1	atpB	HMPREF0380_01460	HMPREF0380_01326	Hypothetical protein.	V-type ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.	0.699
EHO82603.1	atpD	HMPREF0380_01460	HMPREF0380_01327	Hypothetical protein.	V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.704
EHO82603.1	atpE	HMPREF0380_01460	HMPREF0380_01322	Hypothetical protein.	ATP synthase subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.672
EHO84033.1	EHO82355.1	HMPREF0380_01320	HMPREF0380_01596	Hypothetical protein; Belongs to the V-ATPase 116 kDa subunit family.	Magnesium-translocating P-type ATPase.	0.754