Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKB55256.1Hypothetical protein. (306 aa)    
Predicted Functional Partners:
EKB55257.1
Hypothetical protein.
 0.996
EKB55255.1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 0.992
EKB55254.1
Hypothetical protein; Belongs to the ABC transporter superfamily.
 
 0.988
EKB55336.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein domain; Belongs to the ABC transporter superfamily.
 0.987
EKB55258.1
Hypothetical protein.
 
 0.987
EKB53400.1
Hypothetical protein; Belongs to the ABC transporter superfamily.
 0.985
EKB53399.1
Hypothetical protein; Belongs to the ABC transporter superfamily.
 0.984
EKB54520.1
Oligopeptide transport ATP-binding protein AmiF; Belongs to the ABC transporter superfamily.
 0.982
EKB56491.1
Hypothetical protein.
 
 0.978
EKB54521.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein domain; Belongs to the ABC transporter superfamily.
 0.976
Your Current Organism:
Facklamia hominis
NCBI taxonomy Id: 883111
Other names: F. hominis CCUG 36813, Facklamia hominis CCUG 36813
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