STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHR33975.1Rrf2 family protein. (128 aa)    
Predicted Functional Partners:
EHR35510.1
Hypothetical protein.
 
 
 0.875
EHR35658.1
Hypothetical protein.
  
 
 0.859
alaS
alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.768
EHR33973.1
Hypothetical protein; Belongs to the UPF0297 family.
       0.767
EHR35630.1
NifU family SUF system FeS assembly protein.
  
  
 0.697
EHR33972.1
RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
     
 0.689
EHR33967.1
EpsD family peptidyl-prolyl cis-trans isomerase.
 
   
 0.657
rnj
Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.641
EHR33971.1
Hypothetical protein.
       0.600
EHR33966.1
Aminoacyl-histidine dipeptidase.
       0.570
Your Current Organism:
Helcococcus kunzii
NCBI taxonomy Id: 883114
Other names: H. kunzii ATCC 51366, Helcococcus kunzii ATCC 51366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.