EHR32569.1 protein (Helcococcus kunzii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EHR32569.1

L-ribulose-5-phosphate 4-epimerase. (225 aa)

Predicted Functional Partners:

pgk

0.922

tpiA

0.922

EHR32567.1

0.903

EHR34112.1

0.900

mtnK

0.839

EHR35061.1

0.793

EHR32571.1

0.788

EHR33214.1

0.723

EHR32564.1

0.689

EHR31634.1

0.665

Your Current Organism:

Helcococcus kunzii

NCBI taxonomy Id: 883114
Other names: H. kunzii ATCC 51366, Helcococcus kunzii ATCC 51366

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHR31634.1	EHR32564.1	HMPREF9709_01877	HMPREF9709_01495	Putative hexulose-6-phosphate isomerase.	Hypothetical protein.	0.680
EHR31634.1	EHR32569.1	HMPREF9709_01877	HMPREF9709_01500	Putative hexulose-6-phosphate isomerase.	L-ribulose-5-phosphate 4-epimerase.	0.665
EHR32564.1	EHR31634.1	HMPREF9709_01495	HMPREF9709_01877	Hypothetical protein.	Putative hexulose-6-phosphate isomerase.	0.680
EHR32564.1	EHR32569.1	HMPREF9709_01495	HMPREF9709_01500	Hypothetical protein.	L-ribulose-5-phosphate 4-epimerase.	0.689
EHR32564.1	EHR33214.1	HMPREF9709_01495	HMPREF9709_01258	Hypothetical protein.	Hypothetical protein; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.775
EHR32567.1	EHR32569.1	HMPREF9709_01498	HMPREF9709_01500	Hypothetical protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	L-ribulose-5-phosphate 4-epimerase.	0.903
EHR32567.1	EHR32571.1	HMPREF9709_01498	HMPREF9709_01502	Hypothetical protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Hypothetical protein.	0.645
EHR32567.1	mtnK	HMPREF9709_01498	HMPREF9709_01501	Hypothetical protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	5-methylthioribose kinase; Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.	0.989
EHR32569.1	EHR31634.1	HMPREF9709_01500	HMPREF9709_01877	L-ribulose-5-phosphate 4-epimerase.	Putative hexulose-6-phosphate isomerase.	0.665
EHR32569.1	EHR32564.1	HMPREF9709_01500	HMPREF9709_01495	L-ribulose-5-phosphate 4-epimerase.	Hypothetical protein.	0.689
EHR32569.1	EHR32567.1	HMPREF9709_01500	HMPREF9709_01498	L-ribulose-5-phosphate 4-epimerase.	Hypothetical protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.903
EHR32569.1	EHR32571.1	HMPREF9709_01500	HMPREF9709_01502	L-ribulose-5-phosphate 4-epimerase.	Hypothetical protein.	0.788
EHR32569.1	EHR33214.1	HMPREF9709_01500	HMPREF9709_01258	L-ribulose-5-phosphate 4-epimerase.	Hypothetical protein; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.723
EHR32569.1	EHR34112.1	HMPREF9709_01500	HMPREF9709_01048	L-ribulose-5-phosphate 4-epimerase.	Hypothetical protein.	0.900
EHR32569.1	EHR35061.1	HMPREF9709_01500	HMPREF9709_00487	L-ribulose-5-phosphate 4-epimerase.	Hypothetical protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.793
EHR32569.1	mtnK	HMPREF9709_01500	HMPREF9709_01501	L-ribulose-5-phosphate 4-epimerase.	5-methylthioribose kinase; Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.	0.839
EHR32569.1	pgk	HMPREF9709_01500	HMPREF9709_00687	L-ribulose-5-phosphate 4-epimerase.	Hypothetical protein; Belongs to the phosphoglycerate kinase family.	0.922
EHR32569.1	tpiA	HMPREF9709_01500	HMPREF9709_00688	L-ribulose-5-phosphate 4-epimerase.	Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.	0.922
EHR32571.1	EHR32567.1	HMPREF9709_01502	HMPREF9709_01498	Hypothetical protein.	Hypothetical protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.645
EHR32571.1	EHR32569.1	HMPREF9709_01502	HMPREF9709_01500	Hypothetical protein.	L-ribulose-5-phosphate 4-epimerase.	0.788