STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 1; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (279 aa)    
Predicted Functional Partners:
EHR32342.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
 0.986
EHR32341.1
Hypothetical protein.
 
     0.843
EHR32349.1
Hypothetical protein.
 
   
 0.806
EHR32340.1
PTS system, mannose/fructose/sorbose family, IIA component.
       0.727
EHR32339.1
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
  
  
 0.666
EHR32345.1
Hypothetical protein.
 
     0.601
EHR32347.1
Hypothetical protein.
 
     0.534
EHR34665.1
Hypothetical protein.
   
    0.530
EHR34012.1
Hypothetical protein.
   
    0.530
EHR33259.1
Hypothetical protein.
   
    0.530
Your Current Organism:
Helcococcus kunzii
NCBI taxonomy Id: 883114
Other names: H. kunzii ATCC 51366, Helcococcus kunzii ATCC 51366
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