STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKU79480.1Amidohydrolase. (437 aa)    
Predicted Functional Partners:
EKU78211.1
Hypothetical protein.
    
  0.739
EKU77927.1
Amidohydrolase.
  
     0.596
EKU78176.1
Hypothetical protein.
 
  
  0.494
EKU78803.1
Hydantoinase/carbamoylase family amidase.
 
 
  0.447
EKU79481.1
Cytochrome d ubiquinol oxidase, subunit II.
       0.438
EKU79482.1
Hypothetical protein.
       0.438
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.438
EKU79477.1
Anaerobic C4-dicarboxylate uptake C (DcuC) family transporter.
 
     0.421
EKU79483.1
Rrf2 family protein.
       0.418
Your Current Organism:
Veillonella seminalis
NCBI taxonomy Id: 883156
Other names: V. seminalis ACS-216-V-Col6b, Veillonella ratti ACS-216-V-Col6b, Veillonella seminalis ACS-216-V-Col6b
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.