STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKU78900.1Hypothetical protein. (737 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 
 0.833
EKU78901.1
TIGR01440 family protein; Belongs to the UPF0340 family.
     
 0.782
EKU79019.1
Hypothetical protein.
   
 
 0.705
EKU78465.1
Basic amino acid/polyamine antiporter (APA) family transporter.
 
  
 0.704
argH
Argininosuccinate lyase.
     
 0.540
EKU78902.1
Hypothetical protein.
       0.492
EKU78903.1
Hypothetical protein.
       0.489
EKU78904.1
Hypothetical protein.
       0.485
EKU78890.1
Hypothetical protein; Belongs to the arginase family.
  
 
 0.478
EKU77675.1
Diaminopimelate decarboxylase.
    
 0.468
Your Current Organism:
Veillonella seminalis
NCBI taxonomy Id: 883156
Other names: V. seminalis ACS-216-V-Col6b, Veillonella ratti ACS-216-V-Col6b, Veillonella seminalis ACS-216-V-Col6b
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.