STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKU79063.1Hypothetical protein. (391 aa)    
Predicted Functional Partners:
EKU79064.1
Hypothetical protein.
 
  
 0.949
EKU78211.1
Hypothetical protein.
  
 
 0.899
EKU79119.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.893
EKU78388.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.893
EKU77551.1
Hypothetical protein.
 
 
 0.882
trpF
Hypothetical protein; Belongs to the TrpF family.
    
 0.766
aroK
Shikimate 5-dehydrogenase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
 
 0.733
EKU78567.1
Methionine synthase.
   
 
 0.680
EKU78897.1
Threonine dehydratase.
   
 
 0.667
EKU77666.1
Hypothetical protein.
  
 
 0.658
Your Current Organism:
Veillonella seminalis
NCBI taxonomy Id: 883156
Other names: V. seminalis ACS-216-V-Col6b, Veillonella ratti ACS-216-V-Col6b, Veillonella seminalis ACS-216-V-Col6b
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.