STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKU78458.1Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family. (249 aa)    
Predicted Functional Partners:
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.953
EKU78456.1
Hypothetical protein.
       0.788
EKU78459.1
Hypothetical protein.
       0.683
EKU78258.1
YqeB family selenium-dependent molybdenum hydroxylase system protein.
 
 
 
 0.650
EKU78256.1
Hypothetical protein.
 
   
 0.631
EKU78619.1
Cysteine synthase.
  
 
 0.560
EKU78647.1
Hypothetical protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
 0.546
EKU78946.1
Thiamine biosynthesis protein ThiF.
    
 0.546
EKU77884.1
Glutamate synthase (NADPH), homotetrameric.
    
 0.523
EKU78701.1
Hypothetical protein.
  
 
  0.519
Your Current Organism:
Veillonella seminalis
NCBI taxonomy Id: 883156
Other names: V. seminalis ACS-216-V-Col6b, Veillonella ratti ACS-216-V-Col6b, Veillonella seminalis ACS-216-V-Col6b
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