STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKU78465.1Basic amino acid/polyamine antiporter (APA) family transporter. (442 aa)    
Predicted Functional Partners:
EKU78900.1
Hypothetical protein.
 
  
 0.704
EKU78387.1
Inner membrane transporter YhaO.
  
 
 0.674
aroK
Shikimate 5-dehydrogenase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
   
 0.658
trpF
Hypothetical protein; Belongs to the TrpF family.
    
 
 0.541
EKU78534.1
Serine transporter.
  
 
 0.516
EKU78897.1
Threonine dehydratase.
  
  0.474
EKU78466.1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
    0.470
EKU78550.1
Hypothetical protein.
  
  
 0.442
EKU78819.1
Hypothetical protein.
  
 
 0.420
EKU78211.1
Hypothetical protein.
  
  
 0.420
Your Current Organism:
Veillonella seminalis
NCBI taxonomy Id: 883156
Other names: V. seminalis ACS-216-V-Col6b, Veillonella ratti ACS-216-V-Col6b, Veillonella seminalis ACS-216-V-Col6b
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.