STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKU77479.1Hypothetical protein. (634 aa)    
Predicted Functional Partners:
EKU77469.1
TonB family domain-containing protein.
 
 
 
 0.845
EKU79372.1
TonB family domain-containing protein.
 
 
 
 0.770
EKU78777.1
Hypothetical protein.
 
 
 
 0.760
EKU77478.1
Hypothetical protein.
 
  
 0.710
EKU78569.1
Hypothetical protein.
    
   0.698
EKU77400.1
Hypothetical protein.
    
   0.698
EKU77949.1
Hypothetical protein.
  
     0.669
EKU77480.1
Hypothetical protein.
 
     0.647
EKU77955.1
Hypothetical protein.
  
   
 0.643
EKU77959.1
Outer membrane protein assembly complex, YaeT protein.
  
   
 0.614
Your Current Organism:
Veillonella seminalis
NCBI taxonomy Id: 883156
Other names: V. seminalis ACS-216-V-Col6b, Veillonella ratti ACS-216-V-Col6b, Veillonella seminalis ACS-216-V-Col6b
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.