Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKU77556.1comEA protein. (223 aa)    
Predicted Functional Partners:
EKU77889.1
Hypothetical protein.
  
  
 0.826
EKU77887.1
Hypothetical protein.
  
  
 0.809
EKU77557.1
Hypothetical protein.
  
  
 0.762
EKU77890.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
  
 0.743
EKU77891.1
Hypothetical protein.
   
  
 0.702
EKU77558.1
Hypothetical protein.
       0.673
EKU77554.1
Hypothetical protein.
 
  
 0.659
EKU77559.1
Hypothetical protein.
 
     0.630
EKU77768.1
comF family protein.
  
  
 0.564
EKU77555.1
Hypothetical protein.
       0.513
Your Current Organism:
Veillonella seminalis
NCBI taxonomy Id: 883156
Other names: V. seminalis ACS-216-V-Col6b, Veillonella ratti ACS-216-V-Col6b, Veillonella seminalis ACS-216-V-Col6b
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