EPD33004.1 protein (Propionimicrobium lymphophilum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

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Your Current Organism:

Propionimicrobium lymphophilum

NCBI taxonomy Id: 883161
Other names: P. lymphophilum ACS-093-V-SCH5, Propionimicrobium lymphophilum ACS-093-V-SCH5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EPD33004.1	rplP	HMPREF9306_00533	HMPREF9306_00530	Hypothetical protein.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.405
EPD33004.1	rplV	HMPREF9306_00533	HMPREF9306_00528	Hypothetical protein.	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.405
EPD33004.1	rpmC	HMPREF9306_00533	HMPREF9306_00531	Hypothetical protein.	Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.405
EPD33004.1	rpsC	HMPREF9306_00533	HMPREF9306_00529	Hypothetical protein.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.405
EPD33004.1	rpsQ	HMPREF9306_00533	HMPREF9306_00532	Hypothetical protein.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.405
rplP	EPD33004.1	HMPREF9306_00530	HMPREF9306_00533	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	Hypothetical protein.	0.405
rplP	rplV	HMPREF9306_00530	HMPREF9306_00528	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplP	rpmC	HMPREF9306_00530	HMPREF9306_00531	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.999
rplP	rpsC	HMPREF9306_00530	HMPREF9306_00529	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplP	rpsQ	HMPREF9306_00530	HMPREF9306_00532	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.999
rplV	EPD33004.1	HMPREF9306_00528	HMPREF9306_00533	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	Hypothetical protein.	0.405
rplV	rplP	HMPREF9306_00528	HMPREF9306_00530	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.999
rplV	rpmC	HMPREF9306_00528	HMPREF9306_00531	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.999
rplV	rpsC	HMPREF9306_00528	HMPREF9306_00529	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplV	rpsQ	HMPREF9306_00528	HMPREF9306_00532	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.999
rpmC	EPD33004.1	HMPREF9306_00531	HMPREF9306_00533	Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	Hypothetical protein.	0.405
rpmC	rplP	HMPREF9306_00531	HMPREF9306_00530	Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.999
rpmC	rplV	HMPREF9306_00531	HMPREF9306_00528	Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rpmC	rpsC	HMPREF9306_00531	HMPREF9306_00529	Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rpmC	rpsQ	HMPREF9306_00531	HMPREF9306_00532	Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.999