STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPD33395.1FeS assembly protein SufB. (478 aa)    
Predicted Functional Partners:
EPD33397.1
FeS assembly ATPase SufC.
 
 0.999
EPD33398.1
SufS family cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.998
EPD33394.1
Hypothetical protein.
  
  
 0.971
EPD33399.1
NifU family SUF system FeS assembly protein.
 
  
 0.955
EPD33396.1
FeS assembly protein SufD.
   
0.913
EPD33400.1
Hypothetical protein.
 
   
 0.884
EPD32779.1
Hypothetical protein.
  
  
 0.511
hppA
V-type H(+)-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.
       0.483
EPD33401.1
Hypothetical protein.
       0.457
EPD33121.1
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
 
 0.410
Your Current Organism:
Propionimicrobium lymphophilum
NCBI taxonomy Id: 883161
Other names: P. lymphophilum ACS-093-V-SCH5, Propionimicrobium lymphophilum ACS-093-V-SCH5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.