Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPD32652.1Hypothetical protein. (355 aa)    
Predicted Functional Partners:
EPD32651.1
Hypothetical protein.
       0.839
EPD32650.1
Hypothetical protein.
       0.717
EPD32653.1
Hypothetical protein.
       0.636
EPD32654.1
Signal peptide peptidase SppA, 36K type.
     
 0.530
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.432
EPD32655.1
Hypothetical protein.
 
     0.418
EPD31939.1
Hypothetical protein.
       0.411
Your Current Organism:
Propionimicrobium lymphophilum
NCBI taxonomy Id: 883161
Other names: P. lymphophilum ACS-093-V-SCH5, Propionimicrobium lymphophilum ACS-093-V-SCH5
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