Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPD32034.1Hypothetical protein. (358 aa)    
Predicted Functional Partners:
EPD32035.1
Hypothetical protein.
       0.773
EPD32036.1
Hypothetical protein.
       0.757
EPD32037.1
Hypothetical protein.
       0.683
EPD34067.1
Hypothetical protein.
  
  0.643
EPD32032.1
Hypothetical protein.
       0.628
EPD32033.1
Hypothetical protein.
       0.628
EPD32028.1
Hypothetical protein.
       0.517
EPD32029.1
Hypothetical protein.
       0.517
EPD32030.1
Hypothetical protein.
       0.517
EPD32024.1
Hypothetical protein.
  
    0.438
Your Current Organism:
Propionimicrobium lymphophilum
NCBI taxonomy Id: 883161
Other names: P. lymphophilum ACS-093-V-SCH5, Propionimicrobium lymphophilum ACS-093-V-SCH5
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