STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPD32459.1Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (345 aa)    
Predicted Functional Partners:
serC
Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
 
 0.926
EPD32460.1
Hypothetical protein; Belongs to the FGGY kinase family.
    0.918
EPD32504.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.912
EPD32335.1
Hypothetical protein.
    
  0.901
EPD32458.1
L-ribulose-5-phosphate 4-epimerase.
 
    0.819
EPD33367.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.816
EPD33458.1
Hypothetical protein.
 
  
  0.759
EPD33445.1
Hypothetical protein.
  
 
 0.732
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
 
  
 0.667
EPD32408.1
2-oxoacid:acceptor oxidoreductase, alpha subunit.
  
 
 0.644
Your Current Organism:
Propionimicrobium lymphophilum
NCBI taxonomy Id: 883161
Other names: P. lymphophilum ACS-093-V-SCH5, Propionimicrobium lymphophilum ACS-093-V-SCH5
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