SLC10A4 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SLC10A4

Solute carrier family 10 member 4. (406 aa)

Predicted Functional Partners:

SLC10A7

0.647

SLC16A8

0.619

SLC18A2

0.596

GPRC5C

0.586

TMEM169

0.577

KCNH6

0.556

EEF1E1

0.547

CHRNA2

0.546

FRYL

0.528

ATP6V0D2

0.514

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6V0D2	CHRNA2	ENSAPLP00000002610	ENSAPLP00000028465	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	Cholinergic receptor nicotinic alpha 2 subunit.	0.505
ATP6V0D2	KCNH6	ENSAPLP00000002610	ENSAPLP00000013977	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	Potassium voltage-gated channel subfamily H member 6.	0.508
ATP6V0D2	SLC10A4	ENSAPLP00000002610	ENSAPLP00000001089	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	Solute carrier family 10 member 4.	0.514
CHRNA2	ATP6V0D2	ENSAPLP00000028465	ENSAPLP00000002610	Cholinergic receptor nicotinic alpha 2 subunit.	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	0.505
CHRNA2	KCNH6	ENSAPLP00000028465	ENSAPLP00000013977	Cholinergic receptor nicotinic alpha 2 subunit.	Potassium voltage-gated channel subfamily H member 6.	0.569
CHRNA2	SLC10A4	ENSAPLP00000028465	ENSAPLP00000001089	Cholinergic receptor nicotinic alpha 2 subunit.	Solute carrier family 10 member 4.	0.546
EEF1E1	SLC10A4	ENSAPLP00000019457	ENSAPLP00000001089	Uncharacterized protein.	Solute carrier family 10 member 4.	0.547
FRYL	SLC10A4	ENSAPLP00000003780	ENSAPLP00000001089	FRY like transcription coactivator.	Solute carrier family 10 member 4.	0.528
GPRC5C	KCNH6	ENSAPLP00000021487	ENSAPLP00000013977	G protein-coupled receptor class C group 5 member C.	Potassium voltage-gated channel subfamily H member 6.	0.600
GPRC5C	SLC10A4	ENSAPLP00000021487	ENSAPLP00000001089	G protein-coupled receptor class C group 5 member C.	Solute carrier family 10 member 4.	0.586
GPRC5C	SLC16A8	ENSAPLP00000021487	ENSAPLP00000014957	G protein-coupled receptor class C group 5 member C.	Solute carrier family 16 member 8.	0.606
KCNH6	ATP6V0D2	ENSAPLP00000013977	ENSAPLP00000002610	Potassium voltage-gated channel subfamily H member 6.	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	0.508
KCNH6	CHRNA2	ENSAPLP00000013977	ENSAPLP00000028465	Potassium voltage-gated channel subfamily H member 6.	Cholinergic receptor nicotinic alpha 2 subunit.	0.569
KCNH6	GPRC5C	ENSAPLP00000013977	ENSAPLP00000021487	Potassium voltage-gated channel subfamily H member 6.	G protein-coupled receptor class C group 5 member C.	0.600
KCNH6	SLC10A4	ENSAPLP00000013977	ENSAPLP00000001089	Potassium voltage-gated channel subfamily H member 6.	Solute carrier family 10 member 4.	0.556
KCNH6	SLC16A8	ENSAPLP00000013977	ENSAPLP00000014957	Potassium voltage-gated channel subfamily H member 6.	Solute carrier family 16 member 8.	0.600
SLC10A4	ATP6V0D2	ENSAPLP00000001089	ENSAPLP00000002610	Solute carrier family 10 member 4.	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	0.514
SLC10A4	CHRNA2	ENSAPLP00000001089	ENSAPLP00000028465	Solute carrier family 10 member 4.	Cholinergic receptor nicotinic alpha 2 subunit.	0.546
SLC10A4	EEF1E1	ENSAPLP00000001089	ENSAPLP00000019457	Solute carrier family 10 member 4.	Uncharacterized protein.	0.547
SLC10A4	FRYL	ENSAPLP00000001089	ENSAPLP00000003780	Solute carrier family 10 member 4.	FRY like transcription coactivator.	0.528