Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM59Uncharacterized protein. (247 aa)    
Predicted Functional Partners:
IFT80
Intraflagellar transport 80.
 
    
 0.711
NHLRC1
NHL repeat containing E3 ubiquitin protein ligase 1.
      
 0.593
TRIM54
Tripartite motif containing 54.
      
 0.582
TRIM8
Tripartite motif containing 8.
      
 0.567
STAT3
Signal transducer and activator of transcription.
    
 0.548
FSD1L
Fibronectin type III and SPRY domain containing 1 like.
      
 0.502
FSD1
Fibronectin type III and SPRY domain containing 1.
      
 0.490
TRIM37
Tripartite motif containing 37.
    
 
 0.486
MAVS
CARD_2 domain-containing protein.
   
 0.476
SQSTM1
Uncharacterized protein.
    
 0.476
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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