TSKU protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TSKU

Tsukushi, small leucine rich proteoglycan. (531 aa)

Predicted Functional Partners:

ISY1

0.676

ENSAPLP00000023561

0.670

P2RY4

0.656

STOML1

0.641

P2RY6

0.571

ARHGEF17

0.570

ACER3

0.570

FCHSD2

0.554

RAB19

0.552

EPDR1

0.550

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACER3	ARHGEF17	ENSAPLP00000026528	ENSAPLP00000008151	Alkaline ceramidase 3.	Uncharacterized protein.	0.545
ACER3	FCHSD2	ENSAPLP00000026528	ENSAPLP00000019849	Alkaline ceramidase 3.	FCH and double SH3 domains 2.	0.496
ACER3	P2RY4	ENSAPLP00000026528	ENSAPLP00000023707	Alkaline ceramidase 3.	Pyrimidinergic receptor P2Y4; Belongs to the G-protein coupled receptor 1 family.	0.548
ACER3	TSKU	ENSAPLP00000026528	ENSAPLP00000001213	Alkaline ceramidase 3.	Tsukushi, small leucine rich proteoglycan.	0.570
ARHGEF17	ACER3	ENSAPLP00000008151	ENSAPLP00000026528	Uncharacterized protein.	Alkaline ceramidase 3.	0.545
ARHGEF17	ENSAPLP00000023561	ENSAPLP00000008151	ENSAPLP00000023561	Uncharacterized protein.	Uncharacterized protein.	0.669
ARHGEF17	FCHSD2	ENSAPLP00000008151	ENSAPLP00000019849	Uncharacterized protein.	FCH and double SH3 domains 2.	0.485
ARHGEF17	P2RY4	ENSAPLP00000008151	ENSAPLP00000023707	Uncharacterized protein.	Pyrimidinergic receptor P2Y4; Belongs to the G-protein coupled receptor 1 family.	0.569
ARHGEF17	P2RY6	ENSAPLP00000008151	ENSAPLP00000001026	Uncharacterized protein.	Pyrimidinergic receptor P2Y6.	0.424
ARHGEF17	TSKU	ENSAPLP00000008151	ENSAPLP00000001213	Uncharacterized protein.	Tsukushi, small leucine rich proteoglycan.	0.570
ENSAPLP00000023561	ARHGEF17	ENSAPLP00000023561	ENSAPLP00000008151	Uncharacterized protein.	Uncharacterized protein.	0.669
ENSAPLP00000023561	P2RY4	ENSAPLP00000023561	ENSAPLP00000023707	Uncharacterized protein.	Pyrimidinergic receptor P2Y4; Belongs to the G-protein coupled receptor 1 family.	0.571
ENSAPLP00000023561	P2RY6	ENSAPLP00000023561	ENSAPLP00000001026	Uncharacterized protein.	Pyrimidinergic receptor P2Y6.	0.582
ENSAPLP00000023561	TSKU	ENSAPLP00000023561	ENSAPLP00000001213	Uncharacterized protein.	Tsukushi, small leucine rich proteoglycan.	0.670
EPDR1	TSKU	ENSAPLP00000026505	ENSAPLP00000001213	Ependymin related 1.	Tsukushi, small leucine rich proteoglycan.	0.550
FCHSD2	ACER3	ENSAPLP00000019849	ENSAPLP00000026528	FCH and double SH3 domains 2.	Alkaline ceramidase 3.	0.496
FCHSD2	ARHGEF17	ENSAPLP00000019849	ENSAPLP00000008151	FCH and double SH3 domains 2.	Uncharacterized protein.	0.485
FCHSD2	P2RY4	ENSAPLP00000019849	ENSAPLP00000023707	FCH and double SH3 domains 2.	Pyrimidinergic receptor P2Y4; Belongs to the G-protein coupled receptor 1 family.	0.545
FCHSD2	TSKU	ENSAPLP00000019849	ENSAPLP00000001213	FCH and double SH3 domains 2.	Tsukushi, small leucine rich proteoglycan.	0.554
ISY1	RAB19	ENSAPLP00000026175	ENSAPLP00000016200	Uncharacterized protein.	RAB19, member RAS oncogene family.	0.551