STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)    
Predicted Functional Partners:
MAGOH
Mago homolog, exon junction complex subunit.
   
 0.999
EIF4A3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.997
ENSAPLP00000029661
Uncharacterized protein.
   
 0.993
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 0.993
SRSF1
Uncharacterized protein.
   
 0.989
PYM1
PYM homolog 1, exon junction complex associated factor.
    
 0.986
UPF1
UPF1 RNA helicase and ATPase.
    
 0.982
RNPS1
RNA binding protein with serine rich domain 1.
   
0.982
UPF3A
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.977
U3J272_ANAPP
RRM domain-containing protein.
   
 0.976
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.