Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
YOD1YOD1 deubiquitinase. (345 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.992
PLAA
Phospholipase A2 activating protein.
    
 
 0.892
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
   
 
 0.890
UBE4B
Ubiquitination factor E4B.
    
 
 0.856
SPATA5L1
Spermatogenesis associated 5 like 1.
   
 0.840
SPATA5
Spermatogenesis associated 5.
   
 0.840
ENSAPLP00000023897
Uncharacterized protein.
    
 
 0.827
ENSAPLP00000025536
Ubiquitin-like domain-containing protein.
    
 
 0.798
NSFL1C
NSFL1 cofactor.
    
 
 0.795
U3IEG1_ANAPP
Josephin domain-containing protein.
      
 0.782
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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