STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPTSSBSerine palmitoyltransferase small subunit B. (78 aa)    
Predicted Functional Partners:
SPTLC1
Serine palmitoyltransferase long chain base subunit 1.
    
 0.956
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
    
 0.769
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
    
 0.769
ENSAPLP00000021070
Uncharacterized protein.
  
  
 
0.559
LCLAT1
Lysocardiolipin acyltransferase 1.
      
 0.548
GOLGA7B
Golgin A7 family member B.
     
  0.540
GOLGA7
Golgin A7.
     
  0.540
SYF2
SYF2 pre-mRNA splicing factor.
      
 0.531
ISM1
Isthmin 1.
    
 0.520
ORMDL3
ORM1-like protein; Negative regulator of sphingolipid synthesis.
     
 0.457
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.