STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPTSSBSerine palmitoyltransferase small subunit B. (78 aa)    
Predicted Functional Partners:
SPTLC1
Serine palmitoyltransferase long chain base subunit 1.
    
 0.885
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
    
 0.753
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
    
 0.753
ISM1
Isthmin 1.
    
 0.630
LCLAT1
Lysocardiolipin acyltransferase 1.
      
 0.507
ORMDL3
ORM1-like protein; Negative regulator of sphingolipid synthesis.
     
 0.489
ALAS1
5-aminolevulinate synthase.
    
 0.464
U3J6U8_ANAPP
Aminotran_1_2 domain-containing protein.
    
 0.464
GCAT
Aminotran_1_2 domain-containing protein.
    
 0.464
TAF1D
Uncharacterized protein.
      
 0.444
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.