STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRATD2LRAT domain containing 2. (329 aa)    
Predicted Functional Partners:
UROD
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
    
   0.826
CLBA1
Clathrin binding box of aftiphilin containing 1.
      
 0.670
ECPAS
Ecm29 proteasome adaptor and scaffold.
      
 0.626
LRWD1
Leucine rich repeats and WD repeat domain containing 1.
      
 0.624
MTFP1
Mitochondrial fission process 1.
      
 0.603
CCDC85C
Coiled-coil domain containing 85C.
      
 0.602
VWA8
Von Willebrand factor A domain containing 8.
      
 0.552
TRMT61B
tRNA methyltransferase 61B.
      
 0.550
TICRR
TOPBP1 interacting checkpoint and replication regulator.
      
 0.547
SRP54
Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.
      
 0.544
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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