STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRRM1Serine and arginine repetitive matrix 1. (862 aa)    
Predicted Functional Partners:
UPF3A
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.985
ENSAPLP00000029053
RRM domain-containing protein.
    
 0.958
RNPS1
RNA binding protein with serine rich domain 1.
   
 0.955
SRRM3
Serine/arginine repetitive matrix 3.
   
 0.949
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 
 0.944
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.939
CDC40
Cell division cycle 40.
    
 0.928
PPIL1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.920
ENSAPLP00000018291
PPIase cyclophilin-type domain-containing protein.
    
 0.913
ENSAPLP00000020532
RanBD1 domain-containing protein.
    
 0.913
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.