U3I3D9_ANAPP protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

U3I3D9_ANAPP

H15 domain-containing protein. (225 aa)

Predicted Functional Partners:

ENSAPLP00000028245

0.604

B2M

0.450

RPA2

0.450

SASS6

0.450

STN1

0.450

DFFB

0.435

KPNB1

0.435

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B2M	U3I3D9_ANAPP	ENSAPLP00000001804	ENSAPLP00000001759	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	H15 domain-containing protein.	0.450
DFFB	U3I3D9_ANAPP	ENSAPLP00000002914	ENSAPLP00000001759	DNA fragmentation factor subunit beta.	H15 domain-containing protein.	0.435
ENSAPLP00000028245	U3I3D9_ANAPP	ENSAPLP00000028245	ENSAPLP00000001759	Uncharacterized protein.	H15 domain-containing protein.	0.604
KPNB1	U3I3D9_ANAPP	ENSAPLP00000009979	ENSAPLP00000001759	Karyopherin subunit beta 1.	H15 domain-containing protein.	0.435
RPA2	U3I3D9_ANAPP	ENSAPLP00000002078	ENSAPLP00000001759	Replication protein A2.	H15 domain-containing protein.	0.450
SASS6	U3I3D9_ANAPP	ENSAPLP00000014627	ENSAPLP00000001759	SAS-6 centriolar assembly protein.	H15 domain-containing protein.	0.450
STN1	U3I3D9_ANAPP	ENSAPLP00000018279	ENSAPLP00000001759	CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication.	H15 domain-containing protein.	0.450
U3I3D9_ANAPP	B2M	ENSAPLP00000001759	ENSAPLP00000001804	H15 domain-containing protein.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	0.450
U3I3D9_ANAPP	DFFB	ENSAPLP00000001759	ENSAPLP00000002914	H15 domain-containing protein.	DNA fragmentation factor subunit beta.	0.435
U3I3D9_ANAPP	ENSAPLP00000028245	ENSAPLP00000001759	ENSAPLP00000028245	H15 domain-containing protein.	Uncharacterized protein.	0.604
U3I3D9_ANAPP	KPNB1	ENSAPLP00000001759	ENSAPLP00000009979	H15 domain-containing protein.	Karyopherin subunit beta 1.	0.435
U3I3D9_ANAPP	RPA2	ENSAPLP00000001759	ENSAPLP00000002078	H15 domain-containing protein.	Replication protein A2.	0.450
U3I3D9_ANAPP	SASS6	ENSAPLP00000001759	ENSAPLP00000014627	H15 domain-containing protein.	SAS-6 centriolar assembly protein.	0.450
U3I3D9_ANAPP	STN1	ENSAPLP00000001759	ENSAPLP00000018279	H15 domain-containing protein.	CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication.	0.450