NSMF protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NSMF

NMDA receptor synaptonuclear signaling and neuronal migration factor. (530 aa)

Predicted Functional Partners:

HS6ST1

0.611

TACR3

0.611

U3J5M8_ANAPP

0.611

VSTM2L

0.610

PRPF38B

0.610

ENSAPLP00000021511

0.609

SMCHD1

0.602

FEZF1

0.587

ATP6V1D

0.586

ANOS1

0.586

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANOS1	ENSAPLP00000021511	ENSAPLP00000024242	ENSAPLP00000021511	Anosmin 1.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.586
ANOS1	FEZF1	ENSAPLP00000024242	ENSAPLP00000014897	Anosmin 1.	FEZ family zinc finger 1.	0.611
ANOS1	HS6ST1	ENSAPLP00000024242	ENSAPLP00000006608	Anosmin 1.	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	0.612
ANOS1	NSMF	ENSAPLP00000024242	ENSAPLP00000001907	Anosmin 1.	NMDA receptor synaptonuclear signaling and neuronal migration factor.	0.586
ANOS1	TACR3	ENSAPLP00000024242	ENSAPLP00000008336	Anosmin 1.	Tachykinin receptor 3; Belongs to the G-protein coupled receptor 1 family.	0.611
ANOS1	U3J5M8_ANAPP	ENSAPLP00000024242	ENSAPLP00000014805	Anosmin 1.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.678
ATP6V1D	NSMF	ENSAPLP00000015176	ENSAPLP00000001907	ATPase H+ transporting V1 subunit D.	NMDA receptor synaptonuclear signaling and neuronal migration factor.	0.586
ATP6V1D	PRPF38B	ENSAPLP00000015176	ENSAPLP00000031190	ATPase H+ transporting V1 subunit D.	Uncharacterized protein.	0.747
ENSAPLP00000021511	ANOS1	ENSAPLP00000021511	ENSAPLP00000024242	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Anosmin 1.	0.586
ENSAPLP00000021511	FEZF1	ENSAPLP00000021511	ENSAPLP00000014897	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	FEZ family zinc finger 1.	0.487
ENSAPLP00000021511	HS6ST1	ENSAPLP00000021511	ENSAPLP00000006608	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	0.551
ENSAPLP00000021511	NSMF	ENSAPLP00000021511	ENSAPLP00000001907	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	NMDA receptor synaptonuclear signaling and neuronal migration factor.	0.609
FEZF1	ANOS1	ENSAPLP00000014897	ENSAPLP00000024242	FEZ family zinc finger 1.	Anosmin 1.	0.611
FEZF1	ENSAPLP00000021511	ENSAPLP00000014897	ENSAPLP00000021511	FEZ family zinc finger 1.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.487
FEZF1	HS6ST1	ENSAPLP00000014897	ENSAPLP00000006608	FEZ family zinc finger 1.	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	0.586
FEZF1	NSMF	ENSAPLP00000014897	ENSAPLP00000001907	FEZ family zinc finger 1.	NMDA receptor synaptonuclear signaling and neuronal migration factor.	0.587
FEZF1	TACR3	ENSAPLP00000014897	ENSAPLP00000008336	FEZ family zinc finger 1.	Tachykinin receptor 3; Belongs to the G-protein coupled receptor 1 family.	0.601
FEZF1	U3J5M8_ANAPP	ENSAPLP00000014897	ENSAPLP00000014805	FEZ family zinc finger 1.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.611
HS6ST1	ANOS1	ENSAPLP00000006608	ENSAPLP00000024242	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	Anosmin 1.	0.612
HS6ST1	ENSAPLP00000021511	ENSAPLP00000006608	ENSAPLP00000021511	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.551