Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPF3Pre-mRNA processing factor 3. (678 aa)    
Predicted Functional Partners:
PRPF4
Pre-mRNA processing factor 4.
   
 0.999
PRPF6
Pre-mRNA processing factor 6.
   
 0.997
PRPF8
Pre-mRNA processing factor 8.
   
 0.994
ENSAPLP00000032947
PPIase cyclophilin-type domain-containing protein.
    
 0.992
SNU13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.987
DDX23
DEAD-box helicase 23; Belongs to the DEAD box helicase family.
   
 0.981
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 0.980
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
  0.977
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
    
 0.976
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.975
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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