STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NPHP4Nephrocystin 4. (1287 aa)    
Predicted Functional Partners:
NPHP1
Nephrocystin 1.
   
 0.992
RPGRIP1L
RPGRIP1 like.
    
 0.972
RPGR
Retinitis pigmentosa GTPase regulator.
   
 
 0.873
INVS
Inversin.
      
 0.788
NEK8
Uncharacterized protein.
      
 0.720
LATS1
Large tumor suppressor kinase 1.
    
 0.677
LATS2
Non-specific serine/threonine protein kinase.
    
  0.650
FMNL1
Formin like 1.
    
 0.632
FMNL3
FH2 domain-containing protein.
    
 0.632
FMNL2
Formin like 2.
    
 0.632
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.