Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM8Tripartite motif containing 8. (360 aa)    
Predicted Functional Partners:
MAP3K7
Mitogen-activated protein kinase kinase kinase 7.
    
 0.785
SOCS1
Suppressor of cytokine signaling 1.
    
 
 0.628
TRIM66
Tripartite motif containing 66.
      
 0.621
TRIM23
Tripartite motif containing 23.
    
 0.575
TRIM59
Uncharacterized protein.
      
 0.567
TRIM32
Tripartite motif containing 32.
      
 0.544
STRADB
STE20 related adaptor beta.
      
 0.536
TRIM42
Tripartite motif containing 42.
      
 0.508
TRIM24
Tripartite motif containing 24.
      
 0.485
TRAT1
T cell receptor associated transmembrane adaptor 1.
      
 0.446
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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