Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDH13Cadherin 13. (348 aa)    
Predicted Functional Partners:
CDH8
Cadherin 8; Cadherins are calcium-dependent cell adhesion proteins.
   
 
0.814
CDH7
Cadherin 7; Cadherins are calcium-dependent cell adhesion proteins.
   
 
0.787
CDH17
Cadherin 17.
     
0.786
CDH18
Cadherin 18; Cadherins are calcium-dependent cell adhesion proteins.
     
0.784
CDH11
Cadherin 11; Cadherins are calcium-dependent cell adhesion proteins.
   
 
0.777
CTNNB1
Catenin beta 1.
    
 0.773
CDH9
Cadherin 9; Cadherins are calcium-dependent cell adhesion proteins.
     
0.759
CDH6
Cadherin 6; Cadherins are calcium-dependent cell adhesion proteins.
     
0.758
CDH10
Cadherin 10; Cadherins are calcium-dependent cell adhesion proteins.
     
0.755
JUP
Junction plakoglobin.
    
 0.754
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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