U3I4H3_ANAPP protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

U3I4H3_ANAPP

CID domain-containing protein. (218 aa)

Predicted Functional Partners:

RPRD1B

0.937

RPRD2

0.917

RPRD1A

0.902

RPAP2

0.870

SUPT5H

0.826

POLR2B

0.776

POLR2J

0.720

POLR2C

0.704

PCF11

0.697

POLR2D

0.686

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PCF11	POLR2B	ENSAPLP00000012015	ENSAPLP00000020855	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.755
PCF11	POLR2C	ENSAPLP00000012015	ENSAPLP00000004999	Uncharacterized protein.	RNA polymerase II subunit C.	0.774
PCF11	POLR2D	ENSAPLP00000012015	ENSAPLP00000028107	Uncharacterized protein.	RPOL4c domain-containing protein.	0.647
PCF11	POLR2J	ENSAPLP00000012015	ENSAPLP00000003232	Uncharacterized protein.	RNA polymerase II subunit J.	0.549
PCF11	RPAP2	ENSAPLP00000012015	ENSAPLP00000015044	Uncharacterized protein.	RNA polymerase II associated protein 2.	0.681
PCF11	RPRD1A	ENSAPLP00000012015	ENSAPLP00000027851	Uncharacterized protein.	Regulation of nuclear pre-mRNA domain containing 1A.	0.795
PCF11	RPRD1B	ENSAPLP00000012015	ENSAPLP00000002254	Uncharacterized protein.	Regulation of nuclear pre-mRNA domain containing 1B.	0.647
PCF11	RPRD2	ENSAPLP00000012015	ENSAPLP00000031664	Uncharacterized protein.	Uncharacterized protein.	0.697
PCF11	SUPT5H	ENSAPLP00000012015	ENSAPLP00000004928	Uncharacterized protein.	SPT5 homolog, DSIF elongation factor subunit.	0.464
PCF11	U3I4H3_ANAPP	ENSAPLP00000012015	ENSAPLP00000002144	Uncharacterized protein.	CID domain-containing protein.	0.697
POLR2B	PCF11	ENSAPLP00000020855	ENSAPLP00000012015	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.755
POLR2B	POLR2C	ENSAPLP00000020855	ENSAPLP00000004999	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II subunit C.	0.999
POLR2B	POLR2D	ENSAPLP00000020855	ENSAPLP00000028107	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.999
POLR2B	POLR2J	ENSAPLP00000020855	ENSAPLP00000003232	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II subunit J.	0.999
POLR2B	RPAP2	ENSAPLP00000020855	ENSAPLP00000015044	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II associated protein 2.	0.935
POLR2B	RPRD1A	ENSAPLP00000020855	ENSAPLP00000027851	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Regulation of nuclear pre-mRNA domain containing 1A.	0.871
POLR2B	RPRD1B	ENSAPLP00000020855	ENSAPLP00000002254	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Regulation of nuclear pre-mRNA domain containing 1B.	0.971
POLR2B	RPRD2	ENSAPLP00000020855	ENSAPLP00000031664	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.776
POLR2B	SUPT5H	ENSAPLP00000020855	ENSAPLP00000004928	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	SPT5 homolog, DSIF elongation factor subunit.	0.979
POLR2B	U3I4H3_ANAPP	ENSAPLP00000020855	ENSAPLP00000002144	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	CID domain-containing protein.	0.776