Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPRD1BRegulation of nuclear pre-mRNA domain containing 1B. (326 aa)    
Predicted Functional Partners:
RPRD1A
Regulation of nuclear pre-mRNA domain containing 1A.
   
0.998
RPAP2
RNA polymerase II associated protein 2.
   
 0.993
RECQL5
RecQ like helicase 5.
    
 0.985
GPN1
GPN-loop GTPase 1.
    
 
 0.975
POLR2C
RNA polymerase II subunit C.
    
 0.974
POLR2D
RPOL4c domain-containing protein.
    
  0.973
POLR2B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.971
POLR2F
RNA polymerase II subunit F.
    
  0.956
POLR2E
RNA polymerase II subunit E.
    
  0.956
CTDP1
CTD phosphatase subunit 1.
    
 
 0.948
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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