STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERAC1Serine active site containing 1. (517 aa)    
Predicted Functional Partners:
GTF2H5
General transcription factor IIH subunit 5.
      
 0.871
TMEM242
Transmembrane protein 242.
      
 0.850
TULP4
TUB like protein 4.
      
 0.846
SCAF8
SR-related CTD associated factor 8.
      
 0.769
NARS2
Asparaginyl-tRNA synthetase 2, mitochondrial.
   
  
 0.714
TFB1M
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
  
 0.674
SNX9
Sorting nexin 9.
      
 0.667
PARS2
Prolyl-tRNA synthetase 2, mitochondrial.
      
 0.667
RAPGEFL1
Rap guanine nucleotide exchange factor like 1.
      
 0.566
RPS6KA2
Ribosomal protein S6 kinase.
      
 0.547
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.