Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LYRM9Uncharacterized protein; Belongs to the complex I LYR family. (78 aa)    
Predicted Functional Partners:
LYRM1
LYR motif containing 1; Belongs to the complex I LYR family.
      
 0.670
LYRM2
LYR motif containing 2; Belongs to the complex I LYR family.
      
 0.670
GRIFIN
Galectin.
      
 0.664
WSB1
WD repeat and SOCS box containing 1.
      
 0.636
LGALS8
Galectin.
      
 0.603
LYRM7
LYR motif containing 7; Belongs to the complex I LYR family.
      
 0.585
U3J4X9_ANAPP
Galectin.
      
 0.575
LGALSL
Galectin.
      
 0.571
GTF2E2
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
      
 0.553
HELZ
Helicase with zinc finger.
      
 0.548
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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