STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAPVD1GTPase activating protein and VPS9 domains 1. (634 aa)    
Predicted Functional Partners:
RABEP1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.895
RAB17
RAB17, member RAS oncogene family.
    
 0.821
RAB21
RAB21, member RAS oncogene family.
   
 0.770
ALS2
Alsin Rho guanine nucleotide exchange factor ALS2.
    
 0.697
ENSAPLP00000025112
Uncharacterized protein.
    
 0.689
RAB5B
RAB5B, member RAS oncogene family.
    
 0.689
RAB5A
RAB5A, member RAS oncogene family.
    
 0.689
ENSAPLP00000031001
Uncharacterized protein.
    
 0.689
RAB31
RAB31, member RAS oncogene family.
    
 0.680
UBL7
Ubiquitin like 7.
   
 0.662
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.