XPO4 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

XPO4

Exportin 4. (1143 aa)

Predicted Functional Partners:

XPOT

0.985

XPO6

0.967

CSE1L

0.966

XPO5

0.958

XPO1

0.954

RANBP17

0.954

XPO7

0.954

THOC2

0.949

EIF5A2

0.882

EEF1AKMT1

0.786

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSE1L	RANBP17	ENSAPLP00000010168	ENSAPLP00000010360	Chromosome segregation 1 like.	RAN binding protein 17.	0.951
CSE1L	XPO1	ENSAPLP00000010168	ENSAPLP00000003582	Chromosome segregation 1 like.	CRM1_C domain-containing protein.	0.990
CSE1L	XPO4	ENSAPLP00000010168	ENSAPLP00000002749	Chromosome segregation 1 like.	Exportin 4.	0.966
CSE1L	XPO5	ENSAPLP00000010168	ENSAPLP00000028612	Chromosome segregation 1 like.	Exportin 5.	0.975
CSE1L	XPO6	ENSAPLP00000010168	ENSAPLP00000021197	Chromosome segregation 1 like.	Exportin 6.	0.978
CSE1L	XPO7	ENSAPLP00000010168	ENSAPLP00000012374	Chromosome segregation 1 like.	Exportin 7.	0.951
CSE1L	XPOT	ENSAPLP00000010168	ENSAPLP00000029197	Chromosome segregation 1 like.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.976
EEF1AKMT1	XPO4	ENSAPLP00000002626	ENSAPLP00000002749	EEF1A lysine methyltransferase 1; Protein-lysine methyltransferase that selectively catalyzes the trimethylation of EEF1A at 'Lys-79'; Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM5 family.	Exportin 4.	0.786
EIF5A2	RANBP17	ENSAPLP00000026071	ENSAPLP00000010360	Eukaryotic translation initiation factor 5A.	RAN binding protein 17.	0.427
EIF5A2	XPO1	ENSAPLP00000026071	ENSAPLP00000003582	Eukaryotic translation initiation factor 5A.	CRM1_C domain-containing protein.	0.439
EIF5A2	XPO4	ENSAPLP00000026071	ENSAPLP00000002749	Eukaryotic translation initiation factor 5A.	Exportin 4.	0.882
EIF5A2	XPO7	ENSAPLP00000026071	ENSAPLP00000012374	Eukaryotic translation initiation factor 5A.	Exportin 7.	0.427
RANBP17	CSE1L	ENSAPLP00000010360	ENSAPLP00000010168	RAN binding protein 17.	Chromosome segregation 1 like.	0.951
RANBP17	EIF5A2	ENSAPLP00000010360	ENSAPLP00000026071	RAN binding protein 17.	Eukaryotic translation initiation factor 5A.	0.427
RANBP17	XPO1	ENSAPLP00000010360	ENSAPLP00000003582	RAN binding protein 17.	CRM1_C domain-containing protein.	0.963
RANBP17	XPO4	ENSAPLP00000010360	ENSAPLP00000002749	RAN binding protein 17.	Exportin 4.	0.954
RANBP17	XPO5	ENSAPLP00000010360	ENSAPLP00000028612	RAN binding protein 17.	Exportin 5.	0.952
RANBP17	XPO6	ENSAPLP00000010360	ENSAPLP00000021197	RAN binding protein 17.	Exportin 6.	0.956
RANBP17	XPO7	ENSAPLP00000010360	ENSAPLP00000012374	RAN binding protein 17.	Exportin 7.	0.901
RANBP17	XPOT	ENSAPLP00000010360	ENSAPLP00000029197	RAN binding protein 17.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.956