STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL9A3Uncharacterized protein. (678 aa)    
Predicted Functional Partners:
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.915
U3IAT1_ANAPP
Fibrillar collagen NC1 domain-containing protein.
 
 
  0.838
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.802
COL27A1
LAM_G_DOMAIN domain-containing protein.
 
   
  0.800
COL5A1
Fibrillar collagen NC1 domain-containing protein.
 
 
0.778
ITGB4
Integrin beta.
    
 0.774
ITGA11
Integrin subunit alpha 11; Belongs to the integrin alpha chain family.
   
 0.745
COL21A1
VWFA domain-containing protein.
 
    
 0.744
ITGA2
Integrin subunit alpha 2; Belongs to the integrin alpha chain family.
    
 0.741
ITGA1
Integrin subunit alpha 1; Belongs to the integrin alpha chain family.
    
 0.737
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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