RBM20 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RBM20

RNA binding motif protein 20. (1045 aa)

Predicted Functional Partners:

MBNL1

0.705

MBNL2

0.705

ACP6

0.586

ENSAPLP00000022768

0.536

RBM24

0.484

RBMS3

0.483

MRPL28

0.477

ENSAPLP00000021910

0.477

NFIX

0.452

TPM1

0.451

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACP6	MRPL28	ENSAPLP00000007947	ENSAPLP00000005845	Acid phosphatase 6, lysophosphatidic; Belongs to the histidine acid phosphatase family.	Mitochondrial ribosomal protein L28.	0.626
ACP6	RBM20	ENSAPLP00000007947	ENSAPLP00000003054	Acid phosphatase 6, lysophosphatidic; Belongs to the histidine acid phosphatase family.	RNA binding motif protein 20.	0.586
ENSAPLP00000021910	RBM20	ENSAPLP00000021910	ENSAPLP00000003054	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	RNA binding motif protein 20.	0.477
ENSAPLP00000022768	RBM20	ENSAPLP00000022768	ENSAPLP00000003054	Asp-B-Hydro_N domain-containing protein.	RNA binding motif protein 20.	0.536
MBNL1	RBM20	ENSAPLP00000011868	ENSAPLP00000003054	Muscleblind like splicing regulator 1.	RNA binding motif protein 20.	0.705
MBNL2	RBM20	ENSAPLP00000030016	ENSAPLP00000003054	Muscleblind like splicing regulator 2.	RNA binding motif protein 20.	0.705
MRPL28	ACP6	ENSAPLP00000005845	ENSAPLP00000007947	Mitochondrial ribosomal protein L28.	Acid phosphatase 6, lysophosphatidic; Belongs to the histidine acid phosphatase family.	0.626
MRPL28	RBM20	ENSAPLP00000005845	ENSAPLP00000003054	Mitochondrial ribosomal protein L28.	RNA binding motif protein 20.	0.477
NFIX	RBM20	ENSAPLP00000026112	ENSAPLP00000003054	Nuclear factor I X.	RNA binding motif protein 20.	0.452
RBM20	ACP6	ENSAPLP00000003054	ENSAPLP00000007947	RNA binding motif protein 20.	Acid phosphatase 6, lysophosphatidic; Belongs to the histidine acid phosphatase family.	0.586
RBM20	ENSAPLP00000021910	ENSAPLP00000003054	ENSAPLP00000021910	RNA binding motif protein 20.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.477
RBM20	ENSAPLP00000022768	ENSAPLP00000003054	ENSAPLP00000022768	RNA binding motif protein 20.	Asp-B-Hydro_N domain-containing protein.	0.536
RBM20	MBNL1	ENSAPLP00000003054	ENSAPLP00000011868	RNA binding motif protein 20.	Muscleblind like splicing regulator 1.	0.705
RBM20	MBNL2	ENSAPLP00000003054	ENSAPLP00000030016	RNA binding motif protein 20.	Muscleblind like splicing regulator 2.	0.705
RBM20	MRPL28	ENSAPLP00000003054	ENSAPLP00000005845	RNA binding motif protein 20.	Mitochondrial ribosomal protein L28.	0.477
RBM20	NFIX	ENSAPLP00000003054	ENSAPLP00000026112	RNA binding motif protein 20.	Nuclear factor I X.	0.452
RBM20	RBM24	ENSAPLP00000003054	ENSAPLP00000002528	RNA binding motif protein 20.	RNA binding motif protein 24.	0.484
RBM20	RBMS3	ENSAPLP00000003054	ENSAPLP00000016538	RNA binding motif protein 20.	RNA binding motif single stranded interacting protein 3.	0.483
RBM20	TPM1	ENSAPLP00000003054	ENSAPLP00000003219	RNA binding motif protein 20.	Uncharacterized protein; Belongs to the tropomyosin family.	0.451
RBM24	RBM20	ENSAPLP00000002528	ENSAPLP00000003054	RNA binding motif protein 24.	RNA binding motif protein 20.	0.484