RAB8B protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RAB8B

RAB8B, member RAS oncogene family. (339 aa)

Predicted Functional Partners:

MICALL2

0.945

RAB8A

0.901

RILPL2

0.775

GDI2

0.732

RAB3IP

0.729

EHBP1

0.709

EXOC5

0.682

RILPL1

0.680

EXOC2

0.678

RAB3IL1

0.604

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHBP1	RAB8A	ENSAPLP00000019148	ENSAPLP00000008475	EH domain binding protein 1.	RAB8A, member RAS oncogene family.	0.709
EHBP1	RAB8B	ENSAPLP00000019148	ENSAPLP00000003078	EH domain binding protein 1.	RAB8B, member RAS oncogene family.	0.709
EHBP1	RILPL1	ENSAPLP00000019148	ENSAPLP00000022588	EH domain binding protein 1.	Rab interacting lysosomal protein like 1.	0.547
EHBP1	RILPL2	ENSAPLP00000019148	ENSAPLP00000031165	EH domain binding protein 1.	Rab interacting lysosomal protein like 2.	0.499
EXOC2	EXOC5	ENSAPLP00000013764	ENSAPLP00000030107	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Exocyst complex component 5.	0.999
EXOC2	GDI2	ENSAPLP00000013764	ENSAPLP00000007195	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.462
EXOC2	RAB3IL1	ENSAPLP00000013764	ENSAPLP00000016767	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	RAB3A interacting protein like 1.	0.840
EXOC2	RAB3IP	ENSAPLP00000013764	ENSAPLP00000012704	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Sec2p domain-containing protein.	0.867
EXOC2	RAB8A	ENSAPLP00000013764	ENSAPLP00000008475	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	RAB8A, member RAS oncogene family.	0.678
EXOC2	RAB8B	ENSAPLP00000013764	ENSAPLP00000003078	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	RAB8B, member RAS oncogene family.	0.678
EXOC5	EXOC2	ENSAPLP00000030107	ENSAPLP00000013764	Exocyst complex component 5.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.999
EXOC5	GDI2	ENSAPLP00000030107	ENSAPLP00000007195	Exocyst complex component 5.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.433
EXOC5	RAB3IL1	ENSAPLP00000030107	ENSAPLP00000016767	Exocyst complex component 5.	RAB3A interacting protein like 1.	0.856
EXOC5	RAB3IP	ENSAPLP00000030107	ENSAPLP00000012704	Exocyst complex component 5.	Sec2p domain-containing protein.	0.880
EXOC5	RAB8A	ENSAPLP00000030107	ENSAPLP00000008475	Exocyst complex component 5.	RAB8A, member RAS oncogene family.	0.682
EXOC5	RAB8B	ENSAPLP00000030107	ENSAPLP00000003078	Exocyst complex component 5.	RAB8B, member RAS oncogene family.	0.682
GDI2	EXOC2	ENSAPLP00000007195	ENSAPLP00000013764	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.462
GDI2	EXOC5	ENSAPLP00000007195	ENSAPLP00000030107	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Exocyst complex component 5.	0.433
GDI2	RAB3IL1	ENSAPLP00000007195	ENSAPLP00000016767	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB3A interacting protein like 1.	0.696
GDI2	RAB3IP	ENSAPLP00000007195	ENSAPLP00000012704	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Sec2p domain-containing protein.	0.696