Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZCCHC2Zinc finger CCHC-type containing 2. (1207 aa)    
Predicted Functional Partners:
BCLAF3
BCLAF1 and THRAP3 family member 3.
      
 0.867
RELCH
RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing.
    
 
 0.701
CD99L2
CD99 molecule like 2.
      
 0.568
MTREX
Mtr4 exosome RNA helicase.
   
 0.549
DDX60
DExD/H-box helicase 60.
   
 0.546
CEP85
Centrosomal protein 85.
      
 0.544
FBXO16
F-box protein 16.
    
 
 0.477
USP18
USP domain-containing protein; Belongs to the peptidase C19 family.
   
 
 0.467
FGGY
FGGY carbohydrate kinase domain containing.
      
 0.451
SPCS3
Signal peptidase complex subunit 3.
      
 0.451
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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